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Bournazou, M. N. Cruz and Hooshiar, K. and Arellano-Garcia, H. and Wozny, G. and Lyberatos, G. (2013). Model based optimization of the intermittent aeration profile for SBRs under partial nitrification. Water research, 3399–3410.


Riedel, Sebastian L. and Brigham, Christopher J. and Budde, Charles F. and Bader, Johannes and Rha, ChoKyun and Stahl, Ulf and Sinskey, Anthony J. (2013). Recovery of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) from Ralstonia eutropha cultures with non-halogenated solvents. Biotechnology and bioengineering, 461–470.


Ukkonen, Kaisa and Veijola, Johanna and Vasala, Antti and Neubauer, Peter (2013). Effect of culture medium, host strain and oxygen transfer on recombinant Fab antibody fragment yield and leakage to medium in shaken E. coli cultures. Microbial cell factories, 73.


Glazyrina, J. and Krause, M. and Junne, S. and Glauche, F. and Strom, D. and Neubauer, P. (2012). Glucose-limited high cell density cultivations from small to pilot plant scale using an enzyme-controlled glucose delivery system. New Biotechnology, 235-242.


Grimm, T. and Grimm, M. and Klat, R. and Neubauer, A. and Palela, M. and Neubauer, P. (2012). Enzyme-based glucose delivery as a high content screening tool in yeast-based whole-cell biocatalysis. Applied Microbiology and Biotechnology, 931-937.


Liedert, C. and Peltola, M. and Bernhardt, J. and Neubauer, P. and Salkinoja-Salonen, M. (2012). Physiology of Resistant Deinococcus geothermalis Bacterium Aerobically Cultivated in Low-Manganese Medium. Journal of Bacteriology, 1552-1561.


Szeker, K. and Zhou, X. R. and Schwab, T. and Casanueva, A. and Cowan, D. and Mikhailopulo, I. A. and Neubauer, P. (2012). Comparative investigations on thermostable pyrimidine nucleoside phosphorylases from Geobacillus thermoglucosidasius and Thermus thermophilus. Journal of Molecular Catalysis B-Enzymatic, 27-34.


Cruz Bournazou, M. N. and Arellano-Garcia, H. and Wozny, G. and Lyberatos, G. and Kravaris, C. (2012). ASM3 extended for two-step nitrification-denitrification: A model reduction for sequencing batch reactors. Journal of Chemical Technology & Biotechnology, 887–896.


Riedel, Sebastian L. and Bader, Johannes and Brigham, Christopher J. and Budde, Charles F. and Yusof, Zainal Abidin Mohd and Rha, ChoKyun and Sinskey, Anthony J. (2012). Production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) by Ralstonia eutropha in high cell density palm oil fermentations. Biotechnology and bioengineering, 74–83.


Delvigne, F. and Brognaux, A. and Gorret, N. and Neubauer, P. and Delafosse, A. and Collignon, M. L. and Toye, D. and Crine, M. and Boxus, M. and Thonart, P. (2011). Characterization of the response of GFP microbial biosensors sensitive to substrate limitation in scale-down bioreactors. Biochemical Engineering Journal, 131-139.


Glazyrina, J. and Materne, E. and Hillig, F. and Neubauer, P. and Junne, S. (2011). Two-compartment method for determination of the oxygen transfer rate with electrochemical sensors based on sulfite oxidation. Biotechnology Journal, 1003-1008.


Junne, S. and Klingner, A. and Kabisch, J. and Schweder, T. and Neubauer, P. (2011). A two-compartment bioreactor system made of commercial parts for bioprocess scale-down studies: Impact of oscillations on Bacillus subtilis fed-batch cultivations. Biotechnology Journal, 1009-1017.


Khatri, N. K. and Gocke, D. and Trentmann, O. and Neubauer, P. and Hoffmann, F. (2011). Single-chain antibody fragment production in Pichia pastoris: Benefits of prolonged pre-induction glycerol feeding. Biotechnology Journal, 452-462.


Neubauer, P. (2011). Editorial: Towards faster bioprocess development. Biotechnology Journal, 902-903.



Pilarek, M. and Neubauer, P. and Marx, U. (2011). Biological cardio-micro-pumps for microbioreactors and analytical micro-systems. Sensors and Actuators B-Chemical, 517-526.


Sillankorva, S. and Kluskens, L. D. and Lingohr, E. J. and Kropinski, A. M. and Neubauer, P. and Azeredo, J. (2011). Complete genome sequence of the lytic Pseudomonas fluorescens phage phi IBB-PF7A. Virology Journal


Sillankorva, S. and Pires, D. and Oliveira, H. and Neubauer, P. and Azeredo, J. (2011). The Influence of P. fluorescens Cell Morphology on the Lytic Performance and Production of Phage phi IBB-PF7A. Current Microbiology, 347-353.




Szeker, K. and Niemitalo, O. and Casteleijn, M. G. and Juffer, A. H. and Neubauer, P. (2011). High-temperature cultivation and 5 ' mRNA optimization are key factors for the efficient overexpression of thermostable Deinococcus geothermalis purine nucleoside phosphorylase in Escherichia coli. Journal of Biotechnology, 268-274.


Taskila, S. and Osmekhina, E. and Tuomola, M. and Ruuska, J. and Neubauer, P. (2011). Modification of Buffered Peptone Water for Improved Recovery of Heat-Injured Salmonella Typhimurium. Journal of Food Science, M157-M162.


Tegel, H. and Yderland, L. and Bostrom, T. and Eriksson, C. and Ukkonen, K. and Vasala, A. and Neubauer, P. and Ottosson, J. and Hober, S. (2011). Parallel production and verification of protein products using a novel high-throughput screening method. Biotechnology Journal, 1018-1025.



Budde, Charles F. and Riedel, Sebastian L. and Hübner, Florian and Risch, Stefan and Popović, Milan K. and Rha, ChoKyun and Sinskey, Anthony J. (2011). Growth and polyhydroxybutyrate production by Ralstonia eutropha in emulsified plant oil medium. Applied microbiology and biotechnology, 1611–1619.


Budde, Charles F. and Riedel, Sebastian L. and Willis, Laura B. and Rha, ChoKyun and Sinskey, Anthony J. (2011). Production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) from plant oil by engineered Ralstonia eutropha strains. Applied and environmental microbiology, 2847–2854.



Cruz Bournazou, M. N. and Hooshiar, K. and Arellano-Garcia, H. and Lyberatos, G. and Kravaris, C. and Wozny, G. (2011). Optimization of a Sequencing Batch Reactor process for waste water treatment using a two step nitrification model. 21st European Symposium on Computer Aided Process Engineering. Elsevier, 1291–1295.


Glazyrina, J. and Materne, E. M. and Dreher, T. and Storm, D. and Junne, S. and Adams, T. and Greller, G. and Neubauer, P. (2010). High cell density cultivation and recombinant protein production with Escherichia coli in a rocking- motion- type bioreactor. Microbial Cell Factories


Junne, S. and Cruz-Bournazou, M. N. and Angersbach, A. and Gotz, P. (2010). Electrooptical monitoring of cell polarizability and cell size in aerobic Escherichia coli batch cultivations. Journal of Industrial Microbiology & Biotechnology, 935-942.


Jurgen, B. and Breitenstein, A. and Urlacher, V. and Buttner, K. and Lin, H. Y. and Hecker, M. and Schweder, T. and Neubauer, P. (2010). Quality control of inclusion bodies in Escherichia coli. Microbial Cell Factories


Krause, M. and Ukkonen, K. and Haataja, T. and Ruottinen, M. and Glumoff, T. and Neubauer, A. and Neubauer, P. and Vasala, A. (2010). A novel fed-batch based cultivation method provides high cell-density and improves yield of soluble recombinant proteins in shaken cultures. Microbial Cell Factories


Liedert, C. and Bernhardt, J. and Albrecht, D. and Voigt, B. and Hecker, M. and Salkinoja-Salonen, M. and Neubauer, P. (2010). Two-dimensional proteome reference map for the radiation-resistant bacterium Deinococcus geothermalis. Proteomics, 555-563.


Neubauer, P. and Junne, S. (2010). Scale-down simulators for metabolic analysis of large-scale bioprocesses. Current Opinion in Biotechnology, 114-121.


Osmekhina, E. and Neubauer, A. and Klinzing, K. and Myllyharju, J. and Neubauer, P. (2010). Sandwich ELISA for quantitative detection of human collagen prolyl 4-hydroxylase. Microbial Cell Factories



Sillankorva, S. and Neubauer, P. and Azeredo, J. (2010). Phage control of dual species biofilms of Pseudomonas fluorescens and Staphylococcus lentus. Biofouling, 567-575.


Siurkus, J. and Panula-Perala, J. and Horn, U. and Kraft, M. and Rimseliene, R. and Neubauer, P. (2010). Novel approach of high cell density recombinant bioprocess development: Optimisation and scale-up from microlitre to pilot scales while maintaining the fed-batch cultivation mode of E. coli cultures. Microbial Cell Factories


Taskila, S. and Tuomola, M. and Kronlof, J. and Neubauer, P. (2010). Comparison of Enrichment Media for Routine Detection of Beer Spoiling Lactic Acid Bacteria and Development of Trouble-shooting Medium for Lactobacillus backi. Journal of the Institute of Brewing, 151-156.


Taskila, S. and Tuomola, M. and Kronlof, J. and Ruuska, J. and Neubauer, P. (2010). Note - Preliminary Applications of Response Surface Modelling to the Evaluation of Optimal Growth Conditions for Beer-spoiling Pediococcus damnosus. Journal of the Institute of Brewing, 211-214.


Wilmes, B. and Hartung, A. and Lalk, M. and Liebeke, M. and Schweder, T. and Neubauer, P. (2010). Fed-batch process for the psychrotolerant marine bacterium Pseudoalteromonas haloplanktis. Microbial Cell Factories


Junne, Stefan and Nicolas Cruz-Bournazou, M. and Angersbach, Alexander and Götz, Peter (2010). Electrooptical monitoring of cell polarizability and cell size in aerobic Escherichia coli batch cultivations. Journal of industrial microbiology & biotechnology, 935–942.


Cruz Bournazou, M. N. and Arellano-Garcia, H. and Wozny, G. and Lyberatos, G. and Kravaris, C. (2010). Modellreduktion des erweiterten ASM3-Modells für die zweistufige Nitrifikation. Chemie Ingenieur Technik, 1540.


Cruz Bournazou, M. N. and Arellano-Garcia, H. and Junne, S. and Wozny, G. and Neubauer, P. (2010). Neuer Ansatz zur Mechanismenerkennung in E. coli Fed-Batch-Kultivierungen. Chemie Ingenieur Technik, 1503.


Krause, Mirja and Ukkonen, Kaisa and Haataja, Tatu and Ruottinen, Maria and Glumoff, Tuomo and Neubauer, Antje and Neubauer, Peter and Vasala, Antti (2010). A novel fed-batch based cultivation method provides high cell-density and improves yield of soluble recombinant proteins in shaken cultures. Microbial cell factories, 11.


Neubauer, Peter and Junne, Stefan (2010). Scale-down simulators for metabolic analysis of large-scale bioprocesses. Current opinion in biotechnology, 114–121.


Junne, S. and Stosch, H. and Zavodni, I. and Angersbach, A. and Goetz, P. and Neubauer, P. (2009). Electrooptical monitoring of polarizability and cell size in Escherichia coli continuous cultivations. New Biotechnology, S221-S221.



Bournazou, M. CruzN. and Arellano-Garcia, H. and Schöneberger, J. C. and Junne, S. and Neubauer, P. and Woznya, G. (2009). A Novel Approach to Mechanism Recognition in Escherichia Coli Fed-Batch Fermentations. 10th International Symposium on Process Systems Engineering: Part A. Elsevier, 651–656.


Panula-Perälä, Johanna and Siurkus, Juozas and Vasala, Antti and Wilmanowski, Robert and Casteleijn, Marco G. and Neubauer, Peter (2008). Enzyme controlled glucose auto-delivery for high cell density cultivations in microplates and shake flasks. Microbial cell factories, 31.


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